This is exactly the same question I asked when I made my first post here I think, about the pause between MIDI loops. One way you can make it less noticable is to make your MIDI's ending fade out a bit, like a cymbal crash that extends along with a fading bass note. You'll have a pause still, sure, but it won't sound like the choppy one that TGF / MMF makes when playing a midi- it'll sound like you meant to write it that way
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